[bioknoppix-discuss] (no subject)

[Stephan Aleman]

I recently downloaded BioKnoppix and tried JEMBOSS in KDE.

My Open Source Users Group is interested in demonstrating 3d protein structure folding in high resolution, are any of these graphical applications included in BioKnoppix 0.2.1?

Stephan Aleman
Vice President
fosug.org
~/~


----- Original Message -----
From: humberto at hpcf.upr.edu
Date: Thu, 06 May 2004 14:27:11 -0400
To: "Jose Rafael Blesa Blesa" <jrblesa at ochoa.fib.es>
Subject: Re: [bioknoppix-discuss] (no subject) 

> Jose Rafael Blesa Blesa <jrblesa at ochoa.fib.es> wrote:
> 
> > I'm a new user of BioKnoppix. Maybe my question is very simple,
> > but... is the version 0.2.1 beta a full working version? 
> 
> It should be. I'll admit to not using Jemboss much though.
> 
> > When I use the JEMBOSS tools, the ouput file is always empty. Can
> > someone give me a hand.
> 
> Can you give a more concrete example? I tested out some simple Jemboss
> commands, and they mostly work.
> 
> For example
> 
> showdb
> go
> Show results
> 
> works as I'd expect, as does
> 
> showfeat
> tembl:xlrhodop
> go
> Show results
> 
> I did notice that if you put anything in the output options or advanced
> output options, that the Show results doesn't work. I don't know if
> that's a bug or a feature.
> 
> I seem to recall having seen at some point graphical programs also work,
> but I can't get plotorf to produce anything interesting today.
> 
> The command line versions of these tools are working correctly, and
> these are the ones we've been using in class. We'll look into the
> graphical interfaces for the next release.
> 
> -- 
> Humberto Ortiz Zuazaga
> Programmer-Archaeologist
> High Performance Computing facility
> University of Puerto Rico
> http://www.hpcf.upr.edu/~humberto/

>
> _______________________________________________
> bioknoppix-discuss mailing list
> bioknoppix-discuss at lists.hpcf.upr.edu
> http://lists.hpcf.upr.edu/mailman/listinfo/bioknoppix-discuss

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