[bioknoppix-discuss] (no subject)

[humberto at hpcf.upr.edu]

Looks like there is a problem with the /usr/local/bin/runJemboss.csh script.

The last line reads:

(cd /usr/local/share/EMBOSS/jemboss; java org/emboss/jemboss/Jemboss local &)

but regular mortals don't have write permissions in the
/usr/local/share/EMOSS/jemboss directory, so it's hard to save your
work.

As a workaround, you can copy the file to your home directory, and edit
it so that the last line reads:

java org/emboss/jemboss/Jemboss local &

and running ./runJemboss.csh from the command line (the menu option
still won't work). Now more stuff works. Graphical output will result in
files like:

plotorf.1.png

being created in your home directory. You can view these with display,
or browse to it in the file manager. We'll fix this in the next release.

-- 
Humberto Ortiz Zuazaga
Programmer-Archaeologist
High Performance Computing facility
University of Puerto Rico
http://www.hpcf.upr.edu/~humberto/
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